PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c12_21500V3.1.p
Common NamePHYPADRAFT_233852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 2667aa    MW: 283886 Da    PI: 5.9829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c12_21500V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-0812231266347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                           WT  E el+ ++v+++G++ +++Ia ++g +++  qck ++ k 
  Pp3c12_21500V3.1.p 1223 QWTDRERELFTEGVRLFGKD-FERIAVHVGSTKSVGQCKAFFCKT 1266
                          5*****************99.*********99********99886 PP

2Myb_DNA-binding33.97.5e-1117481789346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                          +WT+eE e+++d ++ +G++ W++  ++++  ++l q+k ++q+
  Pp3c12_21500V3.1.p 1748 SWTQEEKEKFADIIRNHGKD-WTRLHECLP-SKSLTQIKTYFQN 1789
                          7*****************99.*********.************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.9E-139601023IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-49691016IPR009057Homeodomain-like
PROSITE profilePS5129317.2769721023IPR017884SANT domain
SMARTSM007172.1E-79731021IPR001005SANT/Myb domain
PROSITE profilePS5129317.61712191271IPR017884SANT domain
SMARTSM007171.1E-812201269IPR001005SANT/Myb domain
PfamPF002499.6E-712231265IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-912231273IPR009057Homeodomain-like
CDDcd001671.56E-512241265No hitNo description
SuperFamilySSF466893.04E-1017431793IPR009057Homeodomain-like
PROSITE profilePS512938.54217441795IPR017884SANT domain
SMARTSM007177.1E-917451793IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-717461790IPR009057Homeodomain-like
PfamPF002493.5E-817481789IPR001005SANT/Myb domain
CDDcd001672.41E-617481791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 2667 aa     Download sequence    Send to blast
MYSPGRGDAR ATALPNARDS STSMPIDHAS AWHREPYNRD ARLDRGDRER IIGGKREWNS  60
DRASFGAPYP RAFGGLHPVN GSLGPPNKRR LNGRHTGFHN EGGRYVSPGH RGEPPFGSVG  120
PVENGLGRKF DRESFYPGSG CPVGGSGFGN GVGVDQRAKE LEERHKKEPF LLLRDGRDGG  180
SCGGIEHGVR SFPSQAVCEA EKSCWERERS KGAVGNGWES SQKLQRDLRE RVGGKAEGYS  240
RREGKLSQHD GGREWSQADK ELEGRRVDGY GSSSRDGLTG DGVGGIKEAV GGCEWRRKER  300
SSSVSASRSG SYVASSGTAK GPVGRPQALD VSGSASSPQV SPHSTASPGV QEASRDDGSQ  360
PSPPKRPRLG WGQGLAKYEK KKVVETDEVG VSASGGSVSG RERSSVSGAT TEVVQTQESQ  420
AAEESPVSVV SNLSTLPPLT PSASPSQQAA EVVSKAMVEC DGVEQEVVGK VCERVAAEAE  480
AGGWISKPEG VVADDVEKRG NMRAVTECGL EESVRQGECC EALGLKESME CQASPKVRGS  540
VEHCGGVEVG GEVGVSDAGS RWAKEDILLR VEKVEYEIEE VERELAKAEK VGSDRRAAGE  600
WVAGVVGDEG SAGVDGVVKV EDGIDDGEAM DVDAAEVHPG RVDSRESGEA MQVACSGRNW  660
SGGEECGNGR WGSDGAGAAG NVGERVGGGV SEGGHGGSVD DGGVLEEGEL GEEKQEEWTS  720
KQMSVGLESE GNPAYSPRAE TEPAQREEMD VTAGVSKCGV AEKEEAERKV ISWDVEVVAR  780
SLMEENKKRA EQARETFVHL LREGVGVEGT LYRCPAEAGV WKENVERHYR NQERMLEKMG  840
ERRQSLRFAE QVLAMRFRAL KEAWKQEQVG MRQQQRGTKP VRRWEVEKRN GTALHCHRSS  900
LRLRPVQAGM EKVEAVSEEC MKKVMAKAVV GPVRGVLKMP SMIVGQENRL ARRFESKNAL  960
VEDPVGMERE RKSMNPWSWE EKRVFLEKFA VYNKNFSKIA SHLELKTTAD CVEFYYRNQK  1020
SEDFERIRRR QQLKKRRDYS RVGGSFLSTG LQTSSQRREA NGHGRTEGAN VQTVGAVVGV  1080
SHISVGTKAA RSSMQQKPVE RQRVSSALEP GSLPGAVEIG KGVSGKENKW CGTGGVSGSA  1140
AGRGGIFGMV LSGATVSCGL SSAVAGAVKI GRERSSVKTM VDAGLVVARC GQYEPNCFGA  1200
KGTRSIHPPL GLENFAKEEG DAQWTDRERE LFTEGVRLFG KDFERIAVHV GSTKSVGQCK  1260
AFFCKTRKRL GLDKLVEKYE DSLKVRYGGV MAESLECADV GRGEAAGMVA EDLRTSSLFE  1320
CSCPGMEVES HGDKGDENEK SVEAVVPVDV QEMEAVEVEA VEGVRVEGVV VEVQSVESEV  1380
VQDVAIADDA LVNGDVEPRG IEGFVAEDDA SQELMSKDEA IEKSVEDTGF EIAVVVASAA  1440
DADVDKASSN ASVEVTAFNE ALRDETVEDA AVEQVVVSEC LDAAAGILEN ENLAVEGSIV  1500
LEQVGTDGHP DEGRGVGGVA VETSNGVCEE GNGDAVGATS VVVISKDVLL GSFVCLKEDT  1560
AIVDSACPAD REPVASTPAV DASGAEDPVC VRTDAVNVPN DASVEAVKVD AAEDVFTGNK  1620
STDLAAGCTI REGDPADVVK VAESGLESSK CVAAVGVDKA VFPVTKMSTQ VADEPEAKAS  1680
PKVDVKSEPG SPQVATSVST DSASFTSAAA AVSHSGEPVF STTSSMQGRE KVGRVGGGET  1740
KSRREPTSWT QEEKEKFADI IRNHGKDWTR LHECLPSKSL TQIKTYFQNS KAKLGLLNAE  1800
GVNVPGGRVA GSRKRKVDEA ENGSNNVSCL SSGNELKGGG VSASDMDGVC QNVKAAVGGV  1860
PSMNPSMGMG SGPSGLESML YPFLGQRVED QIALQNFVRM YSANGLAQNI AGGVNPFVQQ  1920
YGFPMFPNAG HQRASQLSLQ QQLAASLAQK SGQAKGLQQQ ELQGFGSVQQ SGQASVQQKV  1980
AHQLQSAQMV RNQQLLASVM QHQAAAHHQQ NQTSKSVPHP LQPQVVVPQP GVAGQRQQHP  2040
QAQQGGSQQE QGSPGHPIGN PSLGVGNPTQ ASTQTKQLQQ PQVSLHQQQT LQQLQHQQHQ  2100
FLLQQHDHDH VRAQSHPQSH FHIQQPQNSH ASIVQPLIVQ KPKGVVPLQP QVTKPPLGTV  2160
AHQRCMPYRH DQQQLGPALS LLSGNGDSGL SNIRGEISNQ HGEIGDHRSC ISNGGASKGC  2220
DFSRADFHQL SASVQRVKPS HAAIPHRPSP TPAAVSAQGR PGDVKLFGQS LLSQPTSCAV  2280
SQSAARELVS AADRGSLQQS PASTAASSSL TSMPVSAASA TKSHGKESAF RGVSFMPDGL  2340
QGGRSSRGNQ GSLELWNNMS DVRSQAGPVS KSIDGDSDIR SMQECRMSRE AQDVESDPST  2400
LKLTHKLQHL DQARGVQEHS GSEGFSPVVH GVGKARACAN EHGVGVGFAV SCGEVSRTDP  2460
ERRGESIGID LGCSERSSIM ASRSNRGQVE SFAMQAAGLL ANGPQVHRNL IDYLMAITEL  2520
HQTRSLSSHS SVGQPRLEDH QWESLTRHPT NGTAVDALKV NPTLGLGSPI AAPQTHLSGN  2580
DLFQQCVRDS SMYFSQHYPS LAGHGVSSSA WNGGAGLVHP SEMQRVLVNP PLSSFLPGVF  2640
SRAPVTEDHL GSTETRDPER GGGGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-159311025194NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-159311025194NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.109160.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001769009.10.0predicted protein
TrEMBLA9SRK80.0A9SRK8_PHYPA; Predicted protein
STRINGPP1S143_55V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP32151725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-34MYB family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]